BoneJ:​ free and extensible bone image analysis in ImageJ

Doube, Michael; Kłosowski, Michał M.; Arganda-Carreras, Ignacio; Cordelières, Fabrice P.; Dougherty, Robert P.; Jackson, Jonathan S.; Schmid, Benjamin; Hutchinson, John R.; Shefelbine, Sandra J.

Year	Entry
2019	Zenzes M, Bortel EL, Fratzl P, Mundlos S, Schuetz M, Schmidt H, Duda GN, Witte F, Zaslansky P. Normal trabecular vertebral bone is formed via rapid transformation of mineralized spicules: a high-resolution 3D ex-vivo murine study. Acta Biomater. March 1, 2019;86:429-440.
2020	Le Cann S, Törnquist E, Silva Barreto I, Fraulob M, Albini Lomami H, Verezhak M, Guizar-Sicairos M, Isaksson H, Haïat G. Spatio-temporal evolution of hydroxyapatite crystal thickness at the bone-implant interface. Acta Biomater. October 15, 2020;116:391-399.
2021	Martinez-Zelaya VR, Archilha NL, Calasans-Maia M, Farina M, Rossi AM. Trabecular architecture during the healing process of a tibial diaphysis defect. Acta Biomater. January 15, 2021;120:181-193.
2021	Bonithon R, Kao AP, Fernández MP, Dunlop JN, Blunn GW, Witte F, Tozzi G. Multi-scale mechanical and morphological characterisation of sintered porous magnesium-based scaffolds for bone regeneration in critical-sized defects. Acta Biomater. June 2021;127:338-352.
2021	Callens SJP, Tourolle né Betts DC, Müller R, Zadpoor AA. The local and global geometry of trabecular bone. Acta Biomater. August 2021;130:343-361.
2021	Peña Fernández M, Kao AP, Bonithon R, Howells D, link="bodey-andrew-j"Bodey AJ, Wanelik K, Witte F, Johnston R, Arora H, Tozzi G. Time-resolved in situ synchrotron-microct: 4D deformation of bone and bone analogues using digital volume correlation. Acta Biomater. September 1, 2021;131:424.
2019	Doershuk LJ, Saers JPP, Shaw CN, Jashashvili T, Carlson KJ, Stock JT, Ryan TM. Complex variation of trabecular bone structure in the proximalhumerus and femur of five modern human populations. Am J Phys Anthropol. January 2019;168(1):104-118.
2020	Mulder B, Stock JT, Saers JPP, Inskip SA, Cessford C, Robb JE. Intrapopulation variation in lower limb trabecular architecture. Am J Phys Anthropol. September 2020;173(1):112-129.
2020	Janc K, Tarasiuk J, Lipinski P, Bonnet A-S, Wronski S. Assessment of mechanical properties of bone trabeculae as an inverse problem of heterogeneous material modeling. Arch Mech. 2020;72(5):385-414.
2015	Milovanovic P, Zimmermann EA, Riedel C, vom Scheidt A, Herzog L, Krause M, Djonic D, Djuric M, Püschel K, Amling M, Ritchie RO, Busse B. Multi-level characterization of human femoral cortices and their underlying osteocyte network reveal trends in quality of young, aged, osteoporotic and antiresorptive-treated bone. Biomaterials. March 2015;45:46-55.
2015	Varga P, Hesse B, Langer M, Schrof S, Männicke N, Suhonen H, Pacureanu A, Pahr D, Peyrin F, Raum K. Synchrotron X-ray phase nano-tomography-based analysis of the lacunar–canalicular network morphology and its relation to the strains experienced by osteocytes in situ as predicted by case-specific finite element analysis. Biomech Model Mechanobiol. April 2015;14(2):267-282.
2020	Kirby M, Morshed AH, Gomez J, Xiao P, Hu Y, Guo XE, Wang X. Three-dimensional rendering of trabecular bone microarchitecture using a probabilistic approach. Biomech Model Mechanobiol. August 2020;19(4):1263-1281.
2012	Goff MG, Slyfield CR, Kummari SR, Tkachenko EV, Fischer SE, Yi YH, Jekir MG, Keaveny TM, Hernandez CJ. Three-dimensional characterization of resorption cavity size and location in human vertebral trabecular bone. Bone. July 2012;51(1):28-37.
2014	Carriero A, Doube M, Vogt M, Busse B, Zustin J, Levchuk A, Schneider P, Müller R, Shefelbine SJ. Altered lacunar and vascular porosity in osteogenesis imperfecta mouse bone as revealed by synchrotron tomography contributes to bone fragility. Bone. April 2014;61:116-124.
2017	Isaksson H, Le Cann S, Perdikouri C, Turunen MJ, Kaestner A, Tägil M, Hall SA, Tudisco E. Neutron tomographic imaging of bone-implant interface: comparison with X-ray tomography. Bone. October 2017;103:295-301.
2019	Warden SJ, Carballido-Gamio J, Avin KG, Kersh ME, Fuchs RK, Krug R, Bice RJ. Adaptation of the proximal humerus to physical activity: a within-subject controlled study in baseball players. Bone. 2019;121:107-115.
2019	Wood Z, Lynn L, Nguyen JT, Black MA, Patel M, Barak MM. Are we crying wolff? 3D printed replicas of trabecular bone structure demonstrate higher stiffness and strength during off-axis loading. Bone. October 2019;127:635-645.
2020	Plotkin LI, Buvinic S, Balanta-Melo J. In vitro and in vivo studies using non-traditional bisphosphonates. Bone. May 2020;134:115301.
2020	Shi W, Zhang Y, Chen K, He J, Feng X, Wei W, Hua J, Wang J. Primary cilia act as microgravity sensors by depolymerizing microtubules to inhibit osteoblastic differentiation and mineralization. Bone. July 2020;136:115346.
2020	Tarasco M, Cordelières FP, Cancela ML, Laizé V. ZFBONE: an ImageJ toolset for semi-automatic analysis of zebrafish bone structures. Bone. September 2020;138:115480.
2021	Loundagin LL, Pohl AJ, Edwards WB. Stressed volume estimated by finite element analysis predicts the fatigue life of human cortical bone: the role of vascular canals as stress concentrators. Bone. February 2021;143:115647.
2021	Thewlis D, Waters A, Solomon LB, Perilli E. Investigating in vivo knee volumetric bone mineral density and walking gait mechanics in healthy people. Bone. February 2021;143:115662.
2021	Sherk VD, Heveran CM, Foright RM, Johnson GC, Presby DM, Ferguson VL, MacLean PS. Sex differences in the effect of diet, obesity, and exercise on bone quality and fracture toughness. Bone. April 2021;145:115840.
2022	Cifuentes-Mendiola SE, Solis-Suarez DL, Martínez-Dávalos A, Godínez-Victoria M, García-Hernández AL. CD4⁺ T-cell activation of bone marrow causes bone fragility and insulin resistance in type 2 diabetes. Bone. February 2022;155:116292.
2022	Hedjazi G, Guterman-Ram G, Blouin S, Schemenz V, Wagermaier W, Fratzl P, Hartmann MA, Zwerina J, Fratzl-Zelman N, Marini JC. Alterations of bone material properties in growing Ifitm5/BRIL p.s42 knock-in mice, a new model for atypical type vi osteogenesis imperfecta. Bone. September 2022;162:116451.
2022	Meslier QA, DiMauro N, Somanchi P, Nano S, Shefelbine SJ. Manipulating load-induced fluid flow in vivo to promote bone adaptation. Bone. December 2022;165:116547.
2020	Loundagin LL, Haider IT, Cooper DML, Edwards WB. Association between intracortical microarchitecture and the compressive fatigue life of human bone: a pilot study. Bone Rep. June 2020;12:100254.
2020	Steiner L, Synek A, Pahr DH. Comparison of different microCT-based morphology assessment tools using human trabecular bone. Bone Rep. June 2020;12:100261.
2020	Le Cann S, Tudisco E, Tägil M, Hall SA, Isaksson H. Bone damage evolution around integrated metal screws using x-ray tomography: in situ pullout and digital volume correlation. Front Bioeng Biotechnol. August 5, 2020;8:934.
2015	Salmon PL, Ohlsson C, Shefelbine SJ, Doube M. Structure model index does not measure rods and plates in trabecular bone. Front Endocrinol (Lausanne). 2015;6:162.
2020	Ang IC, Fox M, Polk JD, Kersh ME. An algorithm for automated separation of trabecular bone from variably thick cortices in high-resolution computed tomography data. IEEE Trans Biomed Eng. March 2020;67(3):924-930.
2020	Mirzaali MJ, Libonati F, Böhm C, Rinaudo L, Cesana BM, Ulivieri FM, Vergani L. Fatigue-caused damage in trabecular bone from clinical, morphological and mechanical perspectives. Int J Fatigue. April 2020;133:105451.
2019	Georgiou L, Kivell TL, Pahr DH, Buck LT, Skinner MM. Trabecular architecture of the great ape and human femoral head. J Anat. May 2019;234(5):679-693.
2015	Prot M, Saletti D, Pattofatto S, Bousson V, Laporte S. Links between mechanical behavior of cancellous bone and its microstructural properties under dynamic loading. J Biomech. February 5, 2015;48(3):498-503.
2016	Palanca M, Cristofolini L, Dall’Ara E, Curto M, Innocente F, Danesi V, Tozzi G. Digital volume correlation can be used to estimate local strains in natural and augmented vertebrae: an organ-level study. J Biomech. December 8, 2016;49(16):3882-3890.
2017	Palanca M, Bodey AJ, Giorgi M, Viceconti M, Lacroix D, Cristofolini L, Dall'Ara E. Local displacement and strain uncertainties in different bone types by digital volume correlation of synchrotron microtomograms. J Biomech. June 14, 2017;58:27-36.
2020	Blondel M, Abidine Y, Assemat P, Palierne S, Swider P. Identification of effective elastic modulus using modal analysis: application to canine cancellous bone. J Biomech. September 18, 2020;110:109972.
2024	Morgan M, Farra YM, Vergara-Anglim A, Bellini C, Oakes JM, Shefelbine SJ. E-cigarette aerosol exposure effect on bone biomechanical properties in murine models. J Biomech. January 2024;162:111879.
2020	Fraulob M, Le Cann S, Voumard B, Yasui H, Yano K, Vayron R, Matsukawa M, Zysset P, Haïat G. Multimodal evaluation of the spatiotemporal variations of periprosthetic bone properties. J Biomech Eng. December 2020;142(12):121014.
2021	Bennison MBL, Pilkey AK, Lievers WB. Misalignment error in cancellous bone apparent elastic modulus depends on bone volume fraction and degree of anisotropy. J Biomech Eng. February 2021;143(2):021005.
2015	Maquer G, Musy SN, Wandel J, Gross T, Zysset PK. Bone volume fraction and fabric anisotropy are better determinants of trabecular bone stiffness than other morphological variables. J Bone Miner Res. June 2015;30(6):1000-1008.
2017	Guss JD, Horsfield MW, Fontenele FF, Sandoval TN, Luna M, Apoorva F, Lima SF, Bicalho RC, Singh A, Ley RE, van der Meulen MCH, Goldring SR, Hernandez CJ. Alterations to the gut microbiome impair bone strength and tissue material properties. J Bone Miner Res. June 2017;32(6):1343-1353.
2020	Harrison KD, Hiebert BD, Panahifar A, Andronowski JM, Ashique AM, King GA, Arnason T, Swekla KJ, Pivonka P, Cooper DML. Cortical bone porosity in rabbit models of osteoporosis. J Bone Miner Res. November 2020;35(11):2211-2228.
2023	Haider IT, Loundagin LL, Sawatsky A, Kostenuik PJ, Boyd SK, Edwards WB. Twelve months of denosumab and/or alendronate is associated with improved bone fatigue life, microarchitecture, and density in ovariectomized cynomolgus monkeys. J Bone Miner Res. March 2023;38(3):403-413.
2023	Dao T, Robinson DL, Doyle LW, Lee PVS, Olsen J, Kale A, Cheong JLY, Wark JD. Quantifying bone strength deficits in young adults born extremely preterm or extremely low birth weight. J Bone Miner Res. December 2023;38(12):1800-1808.
2019	Song H, Polk JD, Kersh ME. Rat bone properties and their relationship to gait during growth. J Exp Biol. September 2019;222(18):jeb203554.
2019	Saers JPP, Ryan TM, Stock JT. Trabecular bone structure scales allometrically in the foot of four human groups. J Hum Evol. October 2019;135:102654.
2015	Perz R, Toczyski J, Subit D. Variation in the human ribs geometrical properties and mechanical response based on X-ray computed tomography images resolution. J Mech Behav Biomed Mater. January 2015;41:292-301.
2017	Chen Y, Dall’Ara E, Sales E, Manda K, Wallace R, Pankaj P, Viceconti M. Micro-CT based finite element models of cancellous bone predict accurately displacement once the boundary condition is well replicated: a validation study. J Mech Behav Biomed Mater. January 2017;65:644-651.
2017	Tozzi G, Dall’Ara E, Palanca M, Curto M, Innocente F, Cristofolini L. Strain uncertainties from two digital volume correlation approaches in prophylactically augmented vertebrae: local analysis on bone and cement-bone microstructures. J Mech Behav Biomed Mater. March 2017;67:117-126.
2017	Le Cann S, Tudisco E, Perdikouria C, Belfrage O, Kaestner A, Hall S, Tägil M, Isaksson H. Characterization of the bone-metal implant interface by digital volume correlation of in-situ loading using neutron tomography. J Mech Behav Biomed Mater. November 2017;75:271-287.
2020	Koria L, Mengoni M, Brockett C. Estimating tissue-level properties of porcine talar subchondral bone. J Mech Behav Biomed Mater. October 2020;110:103931.
2020	Loundagin LL, Edwards WB. Stressed volume around vascular canals explains compressive fatigue life variation of secondary osteonal bone but not plexiform bone. J Mech Behav Biomed Mater. November 2020;110:104002.
2021	Karali A, Kao AP, Zekonyte J, Blunn G, Tozzi G. Micromechanical evaluation of cortical bone using in situ XCT indentation and digital volume correlation. J Mech Behav Biomed Mater. March 2021;115:104298.
2019	Plasse M, Amson E, Bardin J, Grimal Q, Germain D. Trabecular architecture in the humeral metaphyses of non‐avian reptiles (Crocodylia, Squamata and Testudines): lifestyle, allometry and phylogeny. J Morphol. July 2019;280(7):982-998.
2020	Zdravkovic V, Kaufmann R, Neels A, Dommann A, Hofmann J, Jost B. Bone mineral density, mechanical properties, and trabecular orientation of cancellous bone within humeral heads affected by advanced shoulder arthropathy. J Orthop Res. September 2020;38(9):1914-1919.
2023	Ben Tahar S, Garnier J, Eller K, DiMauro N, Piet J, Mehta S, Bajpayee AG, Shefelbine SJ. Adolescent obesity incurs adult skeletal deficits in murine induced obesity model. J Orthop Res. February 2023;41(2):386-395.
2020	Collins CJ, Kozyrev M, Frank M, Andriotis OG, Byrne RA, Kiener HP, Pretterklieber ML, Thurner PJ. The impact of age, mineralization, and collagen orientation on the mechanics of individual osteons from human femurs. Materialia. March 2020;9:100573.
2012	Tabor Z. Equivalence of mean intercept length and gradient fabric tensors: 3d study. Med Eng Phys. June 2012;34(5):598-604.
2021	Bennison MBL, Pilkey AK, Lievers WB. Evaluating a theoretical and an empirical model of “side effects” in cancellous bone. Med Eng Phys. August 2021;94:8-15.
2021	Jiang H, Robinson DL, Lee PVS, Krejany EO, Yates CJ, Hickey M, Wark JD. Loss of bone density and bone strength following premenopausal risk–reducing bilateral salpingo-oophorectomy: a prospective controlled study (WHAM Study). Osteoporos Int. January 2021;32(1):101-112.
2021	Du J, Hartley C, Brooke-Wavell K, Paggiosi MA, Walsh JS, Li S, Silberschmidt VV. High-impact exercise stimulated localised adaptation of microarchitecture across distal tibia in postmenopausal women. Osteoporos Int. May 2021;32(5):907-919.
2019	Mondal A, Nguyen C, Ma X, Elbanna AE, Carlson JM. Network models for characterization of trabecular bone. Phys Rev E. April 18, 2019;99(4):042406.
2017	Costa MC, Tozzi G, Cristofolini L, Danesi V, Viceconti M, Dall’Ara E. Micro finite element models of the vertebral body: validation of local displacement predictions. PLoS One. July 11, 2017;12(7):e0180151.
2020	Aguirre TG, Ingrole A, Fuller L, Seek TW, Fiorillo AR, Sertich JJW, Donahue SW. Differing trabecular bone architecture in dinosaurs and mammals contribute to stiffness and limits on bone strain. PLoS One. August 19, 2020;15(8):e0237042.
2021	Tiwari AK, Goyal A, Prasad J. Modeling cortical bone adaptation using strain gradients. Proc Inst Mech Eng Part H-J Eng Med. June 2021;235(6):636-654.
2019	Torres AM, Trikanad AA, Aubin CA, Lambers FM, Luna M, Rimnac CM, Zavattieri P, Hernandez CJ. Bone-inspired microarchitectures achieve enhanced fatigue life. Proc Natl Acad Sci USA. December 3, 2019;116(49):24457-24462.
2011	Doube M, Kłosowski MM, Wiktorowicz-Conroy AM, Hutchinson JR, Shefelbine SJ. Trabecular bone scales allometrically in mammals and birds. Proc R Soc B. October 22, 2011;278(1721):3067-3073.
2021	Felder AA, Monzem S, De Souza R, Javaheri B, Mills D, Boyde A, Doube M. The plate-to-rod transition in trabecular bone loss is elusive. R Soc Open Sci. June 9, 2021;8(5):201401.
2021	Zenzes M, Zaslansky P. Micro-CT data of early physiological cancellous bone formation in the lumbar spine of female C57BL/6 mice. Sci Data. May 14, 2021;8(1):132.
2020	Turunen MJ, Le Cann S, Tudisco E, Lovric G, Patera A, Hall SA, Isaksson H. Sub-trabecular strain evolution in human trabecular bone. Sci Rep. 2020;10:13788.
2020	Törnquist E, Gentile L, Prévost S, Diaz A, Olsson U, Isaksson H. Comparison of small-angle neutron and X-ray scattering for studying cortical bone nanostructure. Sci Rep. 2020;10:14552.
2020	Aguirre TG, Fuller L, Ingrole A, Seek TW, Wheatley BB, Steineman BD, Haut Donahue TL, Donahue SW. Bioinspired material architectures from bighorn sheep horncore velar bone for impact loading applications. Sci Rep. 2020;10:18916.
2021	Bonicelli A, Zioupos P, Arnold E, Rogers KD, Xhemali B, Kranioti EF. Age related changes of rib cortical bone matrix and the application to forensic age-at-death estimation. Sci Rep. January 22, 2021;11:2086.
2011	Scheck C, Zupan M. Ductile fracture evaluated through micro-computed X-ray tomography. Scr Mater. December 2011;65(12):1041-1044.
2017	Saers JPP. Ontogeny and Functional Adaptation of Trabecular Bone in the Human Foot [PhD thesis]. Cambridge, UK: University of Cambridge; July 2017.
2013	Moore SR. Bridging Mechanics & Biology to Understand the Periosteum's Role in Bone Regeneration: Towards a Parametric Approach to Engineering Replacement Periosteum [PhD thesis]. Cleveland, OH: Case Western Reserve University; August 2013.
2024	Szabo E. Insights Into the Mechanical Behavior of Maturing Cortical Bone: A Porcine Model [PhD thesis]. Cleveland, OH: Case Western Reserve University; May 2024.
2020	Aguirre TG. Bio-Inspired Design for Engineering Applications: Empirical and Finite Element Studies of Biomechanically Adapted Porous Bone Architectures [PhD thesis]. Colorado State University; Summer 2020.
2012	Slyfield CR Jr. The Biomechanics of Bone Turnover [PhD thesis]. Ithaca, NY: Cornell University; January 2012.
2015	Goff M. The Role of Micro and Ultra-Structure in Microdamage Accumulation in Cancellous Bone [PhD thesis]. Ithaca, NY: Cornell University; August 2015.
2017	Matheny JB. Interactions Between Bone Remodeling and Microdamage in Cancellous Bone [PhD thesis]. Ithaca, NY: Cornell University; August 2017.
2018	Guss JD. The Role of the Gut Microbiome in Bone and Joint [PhD thesis]. Ithaca, NY: Cornell University; December 2018.
2018	Torres AM. Fatigue Behavior of Cancellous Bone, Microdamage Accumulation, and Biologically Inspired Cellular Solids [PhD thesis]. Ithaca, NY: Cornell University; August 2018.
2019	Arora D. Characterization of Bone Structural, Geomteric, and Material Properties in the TallyHO Mouse Model of Type 2 Diabetes Mellitus [Master's thesis]. Ithaca, NY: Cornell University; December 2019.
2021	Sacher S. Characterization of Trabecular Morphology, Microdamage Accumulation, and Collagen Crosslinking in Bone Tissue from Individuals With Type II Diabetes Mellitus [Master's thesis]. Ithaca, NY: Cornell University; May 2021.
2015	Ramcharan MA. Development of Functional Interactions Among Cortical and Trabecular Traits During Growth of the Lumbar Vertebral Body [PhD thesis]. New York, NY: The City University of New York; 2015.
2022	Chen X. An Investigation Into the Plate Fixation for Periprosthetic Femoral Fractures [PhD thesis]. University of Denver; November 2022.
2016	Florencio FL. Multiscale Modelling of Trabecular Bone: From Micro to Macroscale [PhD thesis]. Edinburgh, Scotland: University of Edinburgh; 2016.
2022	Peruzzi CRP. Nanoscale Deformation Mechanisms and Yield Prediction of Lamellar Bone [PhD thesis]. Swiss Federal Institute of Technology Zürich; 2022.
2019	Livingston E. Morphological and Mechanical Analysis of the Porous Structure of Cortical Bone [Master's thesis]. University of Illinois at Urbana-Champaign; 2019.
2020	Fox MC. The Biomechanical Consequences of Body Size Differences in Humans [PhD thesis]. University of Illinois at Urbana-Champaign; 2020.
2020	Song H. The Effect of Mechanical Loading on Bone During Growth [PhD thesis]. University of Illinois at Urbana-Champaign; 2020.
2011	Moodie J. Destabilisation of the Medial Meniscus: Imaging and Mechanics of a Murine Surgical Osteoarthritis Model [PhD thesis]. Imperial College London; August 2011.
2014	Ferro Pereira A. Cortical Bone Adaptation: A Finite-Element Study of the Mouse Tibia [PhD thesis]. Imperial College London; January 2014.
2015	Rodriguez-Florez N. Mechanics of Cortical Bone: Exploring the Micro- and Nano-Scale [PhD thesis]. Imperial College London; January 2015.
2015	Weatherholt AM. Translational Studies Into the Effects of Exercise on Estimated Bone Strength [PhD thesis]. Indianapolis, IN: Indiana University; September 2015.
2020	Bennison MBL. The Role of Cancellous Bone Architecture in Misalignment and Side Effect Errors [Master's thesis]. Sudbury, ON: Laurentian University; 2020.
2019	Du J. Mechanical Adaptation of Human Trabecular Bone: Experimental and Computational Study [PhD thesis]. Loughborough University; 2019.
2021	Törnquist E. Bone Structure Characterisation Using Neutron Scattering Techniques [PhD thesis]. Lund, Sweden: Lund University; 2021.
2014	Jameson JR. Characterization of Bone Material Properties and Microstructure in Osteogenesis Imperfecta/brittle Bone Disease [PhD thesis]. Marquette University; December 2014.
2016	Chakravarty AB. The Effects of Off-Axis Loading on Fracture Risk in the Human Tibia [Master's thesis]. Hamilton, ON: McMaster University; September 2016.
2019	Jhirad A. The Effects of Electrical Stimulation on Loss of Bone Mass in the Ovariectomized Rat [Master's thesis]. Hamilton, ON: McMaster University; 2019.
2021	Fraschetti A. The Effects of Exposure to Trace Elements on the Skeletal Health of American Mink [Master's thesis]. Hamilton, ON: McMaster University; December 2021.
2019	Hanne NJ. Characterizing Osteovascular Structure and Function With High Fat Diet-Induced Obesity and Stroke [PhD thesis]. North Carolina State University; 2019.
2012	Rennick JA. Bone Fracture Prediction Using Computed Tomography Based Rigidity Analysis and the Finite Element Method [Master's thesis]. Northeastern University; April 2012.
2019	Deng A. Assessment of Material Characteristics of Bat Wing Bones [Master's thesis]. Northeastern University; May 2019.
2019	Piet J. Restoring Mechano-Adaptation in Aged Murine Bone [PhD thesis]. Northeastern University; March 2019.
2018	Peña Fernández M. X-Ray Biomechanical Imaging and Digital Volume Correlation of Bone: From Regeneration to Structure [PhD thesis]. Portsmouth, England: University of Portsmouth; December 2018.
2020	Karali A. Multi-Scale Evaluation of Bone Combining Indentation, in Situ XCT Mechanics and Digital Volume Correlation [PhD thesis]. Portsmouth, England: University of Portsmouth; 2020.
2015	Novak TA. Top-Down and Bottom-Up Engineered Microenvironments for Cartilage Tissue Regeneration [PhD thesis]. Purdue University; August 2015.
2015	Worke LJ. Collagen Densification as a Model for Cardiac Fibrosis [Master's thesis]. Purdue University; August 2015.
2011	Ahmed F. Multiscale Quantitative Imaging of Human Femoral Heads Using X-Ray Microtomography [PhD thesis]. Queen Mary University of London; 2011.
2022	Beloglowka K. Ex Vivo Mechanical Testing and FEA Modelling of Bovine Trabecular Bone [Master's thesis]. Queen's University; September 2022.
2023	Branni MG. Constitutive Models of Bone: The Human Femur [PhD thesis]. Queensland University of Technology; 2023.
2016	Chen Y. Verification and Validation of MicroCT-Based Finite Element Models of Bone Tissue Biomechanics [PhD thesis]. Sheffield, UK: University of Sheffield; July 2016.
2018	Costa MC. Prediction of the Risk of Vertebral Fracture in Patients With Metastatic Bone Lesions as a Tool for More Effective Patients’ Management [PhD thesis]. University of Sheffield; November 2018.
2018	Sawyer SW. Structurally Supported Cell-Laden Scaffolds for Bone Tissue Regeneration [PhD thesis]. University of Syracuse; December 2018.
2022	Davis RA. Investigating the Effects of Aging and Prolonged Opioid Use on Bone Histomorphometry, Quality, and Biomechanics [PhD thesis]. University of Akron; August 2022.
2014	Colombo A. La micro-architecture de l’os trabéculaire en croissance: Variabilité tridimensionnelle normale et pathologique analysée par microtomodensitométrie [PhD thesis]. Université de Bordeaux; December 15, 2014.
2020	Loundagin LL. The Influence of Intracortical Microarchitecture on the Mechanical Fatigue of Bone [PhD thesis]. Calgary, AB: University of Calgary; July 2020.
2023	Koshyk A. Influence of Microarchitecture on the Mechanical Fatigue Behaviour of Equine Subchondral Bone [Master's thesis]. Calgary, AB: University of Calgary; September 2023.
2020	Bonnheim N. Fundamental Mechanisms of Load Transfer in the Human Vertebral Body Following Lumbar Total Disc Arthroplasty [PhD thesis]. Berkeley, CA: Berkeley, University of California; 2020.
2016	Heffner MA. Bone Adaptation in a Mouse Model of Reduced Sensory Nerve Function [PhD thesis]. Davis, University of California; 2016.
2019	Nguyen C. Multiscale Network Characterization of the Strength and Robustness of Trabecular Bone [PhD thesis]. Santa Barbara, CA: Santa Barbara, University of California; September 2019.
2019	Jung J-Y. Learning from Nature: An Investigation of an Impact-Resistant System on the Woodpecker Head as a Non-Traumatic Brain Injury Animal Model [PhD thesis]. San Siego, CA: University of California San Diego; 2019.
2018	Tits A. Where Tendons Meet Bones: Structural and Mechanical Analysis of Achilles Tendon Insertion Into Calcaneus [Master's thesis]. Liège, Belgique: Université de Liège; 2018.
2023	Tits A. Attaching Soft to Hard: A Multimodal Correlative Investigation of the Tendon-Bone Interface [PhD thesis]. Liège, Belgique: Université de Liège; 2023.
2023	Cosman MN. Trabecular and Cortical Skeletal Correlates of Locomotor Ontogeny in Pan With Comparisonsto Skeletal Variation and Adaptation in Gorilla and Pongo [PhD thesis]. University of Michigan; 2023.
2017	Palanca M. In Vitro Full-Field Methods for the Biomechanical Characterization of Spine Segments [PhD thesis]. University of Bologna; March 2017.
2016	Qu F. Biomaterial-Mediated Reprogramming of the Wound Interface to Enhance Meniscal Repair [PhD thesis]. Philadelphia, PA: University of Pennsylvania; 2016.
2019	Sperry MM. Multi-Scale Brain Responses in the Development of Persistent Osteoarthritic Temporomandibular Pain [PhD thesis]. Philadelphia, PA: University of Pennsylvania; 2019.
2020	Belda González R. Mechanical and Morphometric Characterization of Cancellous Bone [PhD thesis]. Universität Politècnica de València; March 2020.
2016	McDonald MP. Predicting Distal Radius Failure Load During a Fall Using Mechanical Testing and Peripheral Quantitative Computed Tomography [Master's thesis]. University of Saskatchewan; December 2016.
2020	Hiebert B. The Development of a Cortical Bone Turnover Model: Parathyroid Hormone Effects in the Rabbit [Master's thesis]. University of Saskatchewan; July 2020.
2021	Harrison KD. A Novel in Vivo Synchrotron Radiation Micro-CT Imaging Platform for the Direct Tracking of Remodeling Events in Cortical Bone [PhD thesis]. University of Saskatchewan; December 2021.
2014	Reeves NM. Augmenting Functional Adaptation: Does Obesity Have a Systemic Effect on Bone Strength Properties in Humans? [PhD thesis]. Knoxville, University of Tennessee; May 2014.
2015	Tong H-K. Quantification of Vertebral Trabecular Bone Strain Via Feature Based Image Registration [Master's thesis]. University of Toronto; November 2015.
2016	Collins CJ. A Comprehensive Evaluation of Methods to Determine Mechanical Properties of Long Bone [PhD thesis]. University of Wisconsin – Madison; 2016.
2016	Meyer LA. Testing and Modeling Mechanical Properties of Ex Vivo Trabecular Bone [PhD thesis]. University of Wisconsin – Madison; 2016.
2022	Soukup JW. Structure-Function Relationships and Quantitative Morphology of the Canine Tooth in Domesticated Dogs [PhD thesis]. University of Wisconsin – Madison; 2022.

Year	Entry
1984	Harrigan TP, Mann RW. Characterization of microstructural anisotropy in orthotropic materials using a second rank tensor. J Mater Sci. March 1984;19(3):761-767.
2009	Vasilić B, Rajapakse CS, Wehrli FW. Classification of trabeculae into three‐dimensional rodlike and platelike structures via local inertial anisotropy. Med Phys. July 2009;36(7):3280-3291.
1987	Parfitt AM, Drezner MK, Glorieux FH, Kanis JA, Malluche H, Meunier PJ, Ott SM, Recker RR. Bone histomorphometry: standardization of nomenclature, symbols, and units: report of the ASBMR histomorphometry nomenclature committee. J Bone Miner Res. December 1987;2(6):595-610.
2008	Zhang Y, He Z, Fan S, He K, Li C. Automatic thresholding of micro-CT trabecular bone images. Proceedings of the International Conference on BioMedical Engineering and Informatics (BMEI 2008); May 27-30, 2008; Sanya, Hainan, China.23-27.
1993	Odgaard A, Gundersen HJG. Quantification of connectivity in cancellous bone, with special emphasis on 3-D reconstructions. Bone. March–April 1993;14(2):173-182.
1978	Ridler TW, Calvard S. Picture thresholding using an iterative selection method. IEEE Trans Sys Man Cyb. 1978;8(8):630-632.
1997	Odgaard A. Three-dimensional methods for quantification of cancellous bone architecture. Bone. 1997;20(4):315-328.
1997	Hildebrand T, Rüegsegger P. Quantification of bone microarchitecture with the structure model index. Comput Methods Prog Biomed. 1997;1(1):15-23.
1997	Hildebrand T, Rüegsegger P. A new method for the model-independent assessment of thickness in three-dimensional images. J Microsc (Oxford). 1997;185(1):67-75.
2003	Judex S, Boyd S, Qin Y-X, Miller L, Müller R, Rubin C. Combining high-resolution micro-computed tomography with material composition to define the quality of bone tissue. Curr Osteoporos Rep. June 2003;1(1):11-19.
2000	Day JS, Ding M, Odgaard A, Sumner DR, Hvid I, Weinans H. Parallel plate model for trabecular bone exhibits volume fraction-dependent bias. Bone. November 2000;27(5):715-720.
1999	Hildebrand T, Laib A, Müller R, Dequeker J, Rüegsegger P. Direct three-dimensional morphometric analysis of human cancellous bone: microstructural data from spine, femur, iliac crest, and calcaneus. J Bone Miner Res. July 1999;14(7):1167-1174.