A direct method for fast three-dimensional serial reconstruction

Odgaard, Anders<sup>1</sup>; Andersen, Kurt<sup>2</sup>; Melsen, Flemming<sup>3</sup>; Gundersen, Hans Jørgen G.<sup>4</sup>

Year	Entry
1993	Hollister SJ, Riemer BA. Digital image based finite element analysis for bone microstructure using conjugate gradient and Gaussian filter techniques. In: Wilson JN, Wilson DC, eds. Mathematical Methods in Medical Imaging II. SPIE's 1993 International Symposium on Optics, Imaging, and Instrumentation; July 11-16, 1993; San Diego, CA.95-106. Proceedings of the SPIE; vol 2035.
2002	Müller R. The Zürich experience: one decade of three-dimensional high-resolution computed tomography. Top Magn Reson Imaging. 2002;13(5):307-322.
1996	van Rietbergen B. Mechanical Behavior and Adaptation of Trabecular Bone in Relation to Bone Morphology [PhD thesis]. Nijmegen, Netherlands: Catholic University of Nijmegen; 1996.
2002	Wehrli F, Saha P, Gomberg B, Song H, Snyder P, Benito M, Wright A, Weening R. Role of magnetic resonance for assessing structure and function of trabecular bone. Top Magn Reson Imaging. October 2002;13(5):335-355.
2003	Cooper DML, Turinsky AL, Sensen CW, Hallgrímsson B. Quantitative 3D analysis of the canal network in cortical bone by micro-computed tomography. Anat Rec. September 2003;274B(1):169-179.
2001	Keaveny TM, Morgan EF, Niebur GL, Yeh OC. Biomechanics of trabecular bone. Annu Rev Biomed Eng. 2001;3:307-333.
1996	Amling M, Pösl M, Ritzel H, Hahn M, Vogel M, Wening VJ, Delling G. Architecture and distribution of cancellous bone yield vertebral fracture clues: a histomorphometric analysis of the complete spinal column from 40 autopsy specimens. Arch Orthop Trauma Surg. July 1996;115(5):262-269.
1993	Odgaard A, Gundersen HJG. Quantification of connectivity in cancellous bone, with special emphasis on 3-D reconstructions. Bone. March–April 1993;14(2):173-182.
1993	Gundersen HJG, Boyce RW, Nyengaard JR, Odgaard A. The connEulor: unbiased estimation of connectivity using physical disectors under projection. Bone. ;14(3):217-222.
1994	Odgaard A, Andersen K, Ullerup R, Frich LH, Melsen F. Three-dimensional reconstruction of entire vertebral bodies. Bone. May–June 1994;15(3):335-342.
1995	Boyce RW, Ebert DC, Youngs TA, Paddock CL, Mosekilde L, Stevens ML, Gundersen HJG. Unbiased estimation of vertebral trabecular connectivity in calcium-restricted ovariectomized minipigs. Bone. June 1995;16(6):637-642.
1996	Müller R, Hahn M, Vogel M, Delling G, Rüegsegger P. Morphometric analysis of noninvasively assessed bone biopsies: comparison of high-resolution computed tomography and histologic sections. Bone. March 1996;18(3):215-220.
1997	Odgaard A. Three-dimensional methods for quantification of cancellous bone architecture. Bone. 1997;20(4):315-328.
1997	Beck JD, Canfield BL, Haddock SM, Chen TJH, Kothari M, Keaveny TM. Three-dimensional imaging of trabecular bone using the computer numerically controlled milling technique. Bone. 1997;21(3):281-287.
1998	Müller R, Van Campenhout H, Van Damme B, Van der Perre G, Dequeker J, Hildebrand T, Rüegsegger P. Morphometric analysis of human bone biopsies: a quantitative structural comparison of histological sections and micro-computed tomography. Bone. July 1998;23(1):59-66.
1999	Ulrich D, van Rietbergen B, Laib A, Rüegsegger P. The ability of three-dimensional structural indices to reflect mechanical aspects of trabecular bone. Bone. 1999;25(1):55-60.
1999	Uchiyama T, Tanizawa T, Muramatsu H, Endo N, Takahashi HE, Hara T. Three-dimensional microstructural analysis of human trabecular bone in relation to its mechanical properties. Bone. 1999;25(4):487-491.
2000	Day JS, Ding M, Odgaard A, Sumner DR, Hvid I, Weinans H. Parallel plate model for trabecular bone exhibits volume fraction-dependent bias. Bone. November 2000;27(5):715-720.
2002	Pistoia W, van Rietbergen B, Lochmüller E-M, Lill CA, Eckstein F, Rüegsegger P. Estimation of distal radius failure load with micro-finite element analysis models based on three-dimensional peripheral quantitative computed tomography images. Bone. June 2002;30(6):842-848.
2016	Schwiedrzik J, Gross T, Bina M, Pretterklieber M, Zysset P, Pahr D. Experimental validation of a nonlinear μFE model based on cohesive-frictional plasticity for trabecular bone. Int J Num Meth Biomed Eng. April 2016;32(4):e02739.
1996	Van Rietbergen B, Weinans H, Huiskes R, Polman BJW. Computational strategies for iterative solutions of large FEM applications employing voxel data. Int J Num Meth Eng. August 30, 1996;39(16):2743-2767.
2000	Huiskes R. If bone is the answer, then what is the question? J Anat. August 2000;197(2):145-156.
1993	Dalstra M, Huiskes R, Odgaard A, van Erning L. Mechanical and textural properties of pelvic trabecular bone. J Biomech. April–May 1993;26(4-5):523-535.
1995	van Rietbergen B, Weinans H, Huiskes R, Odgaard A. A new method to determine trabecular bone elastic properties and loading using micromechanical finite-element models. J Biomech. January 1995;28(1):69-81.
1997	Odgaard A, Kabel J, van Rietbergen B, Dalstra M, Huiskes R. Fabric and elastic principal directions of cancellous bone are closely related. J Biomech. 1997;30(5):487-495.
1998	Ulrich D, van Rietbergen B, Weinans H, Rüegsegger P. Finite element analysis of trabecular bone structure: a comparison of image-based meshing techniques. J Biomech. December 1998;31(12):1187-1192.
2003	Zysset PK. A review of morphology–elasticity relationships in human trabecular bone: theories and experiments. J Biomech. October 2003;36(10):1469-1485.
2015	van Rietbergen B, Ito K. A survey of micro-finite element analysis for clinical assessment of bone strength: the first decade. J Biomech. March 18, 2015;48(5):832-841.
1993	Huiskes R, Hollister SJ. From structure to process, from organ to cell: recent developments of FE-analysis in orthopaedic biomechanics. J Biomech Eng. November 1993;115(4B):520-527.
1993	Keaveny TM, Hayes WC. A 20-year perspective on the mechanical properties of trabecular bone. J Biomech Eng. November 1993;115(4B):534-542.
2001	Pistoia W, van Rietbergen B, Laib A, Rüegsegger P. High-resolution three-dimensional-pqct images can be an adequate basis for in-vivo μfe analysis of bone. J Biomech Eng. October 2001;123(2):176-183.
2000	Nafei A, Kabel J, Odgaard A, Linde F, Hvid I. Properties of growing trabecular ovine bone, II: architectural and mechanical properties. J Bone Joint Surg. August 2000;82B(6):921-927.
1995	Chung H, Wehrli FW, Williams JL, Wehrli SL. Three‐dimensional nuclear magnetic resonance microimaging of trabecular bone. J Bone Miner Res. October 1995;10(10):1452-1461.
1995	Lane NE, Thompson JM, Strewler GJ, Kinney JH. Intermittent treatment with human parathyroid hormone (hPTH[1‐34]) increased trabecular bone volume but not connectivity in osteopenic rats. J Bone Miner Res. October 1995;10(10):1470-1477.
1996	Hipp JA, Jansujwicz A, Simmons CA, Snyder BD. Trabecular bone morphology from micro-magnetic resonance imaging. J Bone Miner Res. February 1996;11(2):286-292.
1996	Müller R, Hildebrand T, Häuselmann HJ, Rüegsegger P. In vivo reproducibility of three‐dimensional structural properties of noninvasive bone biopsies using 3D‐pQCT. J Bone Miner Res. November 1996;11(11):1745-1750.
1997	Simmons CA, Hipp JA. Method-based differences in the automated analysis of the three-dimensional morphology of trabecular bone. J Bone Miner Res. June 1997;12(6):942-947.
1999	Hildebrand T, Laib A, Müller R, Dequeker J, Rüegsegger P. Direct three-dimensional morphometric analysis of human cancellous bone: microstructural data from spine, femur, iliac crest, and calcaneus. J Bone Miner Res. July 1999;14(7):1167-1174.
2001	van der Linden JC, Homminga J, Verhaar JAN, Weinans H. Mechanical consequences of bone loss in cancellous bone. J Bone Miner Res. March 2001;16(3):457-465.
2012	Slyfield CR, Tkachenko EV, Wilson DL, Hernandez CJ. Three-dimensional dynamic bone histomorphometry. J Bone Miner Res. February 2012;27(2):486-495.
2007	Kazakia GJ, Lee JJ, Singh M, Bigley RF, Martin RB, Keaveny TM. Automated high-resolution three-dimensional fluorescence imaging of large biological specimens. J Microsc (Oxford). February 2007;225(2):109-117.
2009	Slyfield CR Jr, Niemeyer KE., Tkachenko EV, Tomlinson RE, Steyer GG, Patthanacharoenphon CG, Kazakia GJ, Wilson DL, Hernandez CJ. Three-dimensional surface texture visualization of bone tissue through epifluorescence-based serial block face imaging. J Microsc (Oxford). October 2009;236(1):52-59.
2010	Kadir MRA, Syahrom A, Öchsner A. Finite element analysis of idealised unit cell cancellous structure based on morphological indices of cancellous bone. Med Biol Eng Comput. May 2010;48(5):497-505.
1995	Müller R, Rüegsegger P. Three-dimensional finite element modelling of non-invasively assessed trabecular bone structures. Med Eng Phys. March 1995;17(2):126-133.
1997	Ulrich D, Hildebrand T, Van Rietbergen B, Müller R, Rüegsegger P. The quality of trabecular bone evaluated with micro-computed tomography, FEA and mechanical testing. Stud Health Technol Inform. 1997;40:97-112.
1998	van Rietbergen B, Majumdar S, Pistoia W, Newitt DC, Kothari M, Laib A, Rüegsegger P. Assessment of cancellous bone mechanical properties from micro-FE models based on micro-CT, pQCT and MR images. Technol Health Care. December 1998;6(5-6):413-420.
2009	Slyfield CR Jr. Automated Sub-Micron Resolution Serial Block Face Imaging of Cancellous Bone Using Epifluorescence Microscopy [Master's thesis]. Cleveland, OH: Case Western Reserve University; January 2009.
2007	Liu XS. High-Resolution Image Based Micro-Mechanical Modeling of Trabecular Bone [PhD thesis]. Columbia University; 2007.
2012	Slyfield CR Jr. The Biomechanics of Bone Turnover [PhD thesis]. Ithaca, NY: Cornell University; January 2012.
2005	Day JS. Bone Quality: The Mechanical Effects of Microarchitecture and Matrix Properties [PhD thesis]. Erasmus University Rotterdam; 2005.
2008	Xu Q. Evaluation of Bone Quality Using Novel Image Analyses and Mechanical Testing Methods [PhD thesis]. Louisville, KY: University of Louisville; August 2008.
2011	Yao H. Microstructure-Based Characterization and Modeling of Trabecular Bone Deformation and Failure [PhD thesis]. Southern Methodist University; August 3, 2011.
2014	Gross T. Development and Application of 3d CT Image-Based Micro and Macro Finite Element Models for Human Bones and Orthopedic Implant Systems [PhD thesis]. Vienna University of Technology; 2014.
2001	Boyd SK. Microstructural Bone Adaptation in an Experimental Model of Osteoarthritis [PhD thesis]. Calgary, AB: University of Calgary; January 2001.
2005	Cooper DML. 3D Micro-CT Imaging of Human Cortical Bone Porosity: A Novel Method for Estimating Age At Death [PhD thesis]. Calgary, AB: University of Calgary; December 2005.
2004	Kazakia GJ. Development, Analysis, and Imaging of a Tissue Engineered Trabecular Bone Substitute [PhD thesis]. Berkeley, CA: Berkeley, University of California; 2004.
1994	Rudert MJ. Bone Grafting for Femoral Head Osteonecrosis: Automated Creation of Patient-Specific Finite Element Models [PhD thesis]. University of Iowa; December 1994.
1993	Goulet RW. The Quantification of the Structure and Mechanical Properties of Trabecular Bone [PhD thesis]. University of Michigan; 1993.
2010	Alberich Bayarri Á. In Vivo Morphometric and Mechanical Characterization of Trabecular Bone from High Resolution Magnetic Resonance Imaging [PhD thesis]. Universität Politècnica de València; 2010.
2013	Pratt I. In Vivo Imaging of Cortical Porosity by Synchrotron Phase Contrast Micro Computed Tomography [Master's thesis]. University of Saskatchewan; August 2013.
2018	Pratt I. Interpreting the 3D Orientation of Vascular Canals in Cortical Bone in Birds and Bats [PhD thesis]. University of Saskatchewan; September 2018.
2016	Andronowski JM. Evaluating Differential Nuclear DNA Yield Rates Among Human Bone Tissue Types: A Synchrotron Micro-CT Approach [PhD thesis]. Knoxville, University of Tennessee; May 2016.

Year	Entry
1990	Odgaard A, Jensen EB, Gundersen HJG. Estimation of structural anisotropy based on volume orientation: a new concept. J Microsc (Oxford). February 1990;157(pt 2):149-162.
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