Resorption cavities result from the activity of osteoclasts, cells that remove old or damaged tissue during bone remodeling. These cavities are believed to act as stress risers, potentially impairing bone strength and increasing fracture risk. Estrogen depletion has been associated with an increase in bone remodeling, but it is unclear whether the change is due to an increase in the number of cavities, surface area of individual cavities, or both. The distribution of stress concentration due to cavities may be related to their number and size, independent of the amount of bone remodeling. Here we present and validate the first, 3D approach to measuring individual resorption cavities in cancellous bone. Additionally, cavity number and surface area are compared in a standard animal model of post-menopausal osteoporosis, the ovarietomized rat.